Is the term “check roger” considered to be disrespectful?

Ok let’s try this again since the last one wanted to get deleted. I have been hearing junior enlisted say it towards NCO’s more and more. Is this a disrespectful way of saying “roger that, and go freak yourself” ?
When I was in the infantry an individual was nearly smoked to death for saying check roger to his squad leader. Not sure if it is only a combat arms thing. More clarification would be appreciated